#Proteomics

Showing 13 of 13 repositories tagged #proteomics, ranked by stars

K-Dense-AI
K-Dense-AI
scientific-agent-skills

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.

Score
100
โ˜… 30.4k โ‘‚ 3.1k +288/day
Python
pachterlab
pachterlab
gget

๐Ÿงฌ gget enables efficient querying of genomic reference databases

Score
50
โ˜… 1.2k โ‘‚ 92 +4/day
Python
lightdock
lightdock
lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Score
100
โ˜… 402 โ‘‚ 55 +1/day
Python
lgatto
lgatto
TeachingMaterial

Various teaching material

Score
0
โ˜… 188 โ‘‚ 79 โ€”
HTML
Nesvilab
Nesvilab
philosopher

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

Score
100
โ˜… 128 โ‘‚ 21 โ€”
Go
wfondrie
wfondrie
depthcharge

A deep learning toolkit for mass spectrometry

Score
50
โ˜… 95 โ‘‚ 27 โ€”
Python
MannLabs
MannLabs
alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

Score
0
โ˜… 94 โ‘‚ 20 โ€”
Jupyter Notebook
BioTender-max
BioTender-max
awesome-bio-agent-skills

A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.

Score
0
โ˜… 93 โ‘‚ 19 +9/day
Python
twoXes
twoXes
awesome-structural-bioinformatics

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Score
0
โ˜… 81 โ‘‚ 11 โ€”
Python
jpquast
jpquast
protti

Picotti lab data analysis package.

Score
67
โ˜… 66 โ‘‚ 9 โ€”
R
UKHD-NP
UKHD-NP
proteopy

An AnnData-based framework for integrated proteomics analysis

Score
33
โ˜… 27 โ‘‚ 3 โ€”
Python
theGreatHerrLebert
theGreatHerrLebert
rustims

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Score
100
โ˜… 23 โ‘‚ 6 โ€”
Python
ikmb
ikmb
vcf2prot

Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

Score
0
โ˜… 21 โ‘‚ 2 โ€”
Rust
Related Topics
#mass-spectrometry#bioinformatics#data-analysis#genomics#protein#python#agent-skills#claude#claude-skills#computational-biology#drug-discovery#metabolomics

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