#Mass-spectrometry

Showing 14 of 14 repositories tagged #mass-spectrometry, ranked by stars

matchms
matchms
matchms

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

Score
100
★ 260 ⑂ 81 +1/day
Python
Nesvilab
Nesvilab
philosopher

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

Score
88
★ 128 ⑂ 21
Go
MannLabs
MannLabs
alphatims

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

Score
50
★ 97 ⑂ 29
Python
wfondrie
wfondrie
depthcharge

A deep learning toolkit for mass spectrometry

Score
0
★ 95 ⑂ 27
Python
MannLabs
MannLabs
alphamap

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

Score
0
★ 94 ⑂ 20
Jupyter Notebook
EMSL-Computing
EMSL-Computing
CoreMS

CoreMS is a comprehensive mass spectrometry software framework

Score
100
★ 66 ⑂ 39
Python
jpquast
jpquast
protti

Picotti lab data analysis package.

Score
62
★ 66 ⑂ 9
R
chhh
chhh
batmass

Mass spectrometry data visualization

Score
0
★ 40 ⑂ 8
Java
MannLabs
MannLabs
alphaviz

AlphaViz is a cutting-edge browser-based interactive visualization tool allowing to visualize the processed mass spectrometry data acquired with Bruker instrument.

Score
50
★ 39 ⑂ 6
Python
fgcz
fgcz
rawDiag

Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package

Score
12
★ 37 ⑂ 11
R
UKHD-NP
UKHD-NP
proteopy

An AnnData-based framework for integrated proteomics analysis

Score
38
★ 27 ⑂ 3
Python
xxao
xxao
mMass

Mass Spectrometry Tool

Score
25
★ 26 ⑂ 22
Python
theGreatHerrLebert
theGreatHerrLebert
rustims

A Framework for IMS-MS Raw Data Processing written in Rust and Python.

Score
0
★ 23 ⑂ 6
Python
OpenMS
OpenMS
pyopenms_viz

Streamlining Mass Spectrometry Data Visualization with Pandas

Score
75
★ 23 ⑂ 20
Jupyter Notebook
Related Topics
#proteomics#data-analysis#python#visualization#metabolomics#gui#omics#r#analysis#fuzzy-matching#fuzzy-search#python3

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