#Computational-biology
Showing 34 of 34 repositories tagged #computational-biology, ranked by stars
List of Computer Science courses with video lectures.
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
Protein Graph Library
A comprehensive library for computational molecular biology
OpenChem: Deep Learning toolkit for Computational Chemistry and Drug Design Research
A Go package for engineering organisms.
Interactive network visualization in Python and Dash, powered by Cytoscape.js
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
DANCE: a deep learning library and benchmark platform for single-cell analysis
Ten Quick Tips for Deep Learning in Biology
A Curated List of Computational Biology Datasets Suitable for Machine Learning
dna2vec: Consistent vector representations of variable-length k-mers
Deep learning meets molecular dynamics.
Precision genomics for everyone, everywhere. Powered by private AI.
Python Programming for Biologists
Awesome list of computational biology.
Python3 binding to mRMR Feature Selection algorithm (currently not maintained)
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
🧬 An R package for visualizing molecular data in 3D
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Package for processing and analyzing glycans and their role in biology.
Race and ethnicity Imputation from Disease history with Deep LEarning
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Various utilities regarding Levenshtein transducers. (Java)
Awesome papers related to generative flow matching and its applications in bioinformatics. (Nature Machine Intelligence)
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
MCP server for spatial transcriptomics analysis through natural language interfaces.
Python API for the Interactive Tree of Life (iTOL)
Implementation of DiffDock-Pocket: Diffusion for Pocket-Level Docking with Side Chain Flexibility
A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics