#Biology
Showing 45 of 45 repositories tagged #biology, ranked by stars
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science
Foundation Models for Genomics & Transcriptomics
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)
Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry
A general, evolvable, and distributed agent framework & harness for data science.
Library for Digital Pathology Image Processing
An interactive heatmap visualization built using D3.js
Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained version of Escher and is aligned with the npm package, PyPI package, and website deployments.
A list of web-based interactive biological data visualizations.
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Ten Quick Tips for Deep Learning in Biology
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)
Python Programming for Biologists
Protein and molecule viewer, editor, simulator
Comparative Genomics Toolkit 3
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
TigerLily: Finding drug interactions in silico with the Graph.
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Forkable teaching materials for course on working with data in R
Race and ethnicity Imputation from Disease history with Deep LEarning
A plant disease detector (classifier) based on the PlantVillage dataset
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
Repository for the BioCLIP 2 model project. [NeurIPS'25 Spotlight] BioCLIP 2 is a biological foundation model trained on TreeOfLife-200M. Despite the narrow training objective, BioCLIP 2 yields extraordinary accuracy when applied to various biological visual tasks such as habitat classification and trait prediction.
A web application to visualize and edit pathway models
ProCyon: A multimodal foundation model for protein phenotypes
ChatCell: Facilitating Single-Cell Analysis with Natural Language
A free and collaborative space for Machine Learning 🤖 applied to Biology 🧬
Biologically-Inspired and Machine Learning Algorithms written in Python
Symbolic Generators for Complex Networks
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
Malicious URL Detection Model NN optimized by Genetic Algorithms 🧬
A python package to analyse qPCR data for single-use or high-throughput application
Wrappers for easier generative biology workflows
Openlab - decentralised bioinformatics services - from the command line.
Distributed multiplayer sandbox evolution simulation
A decentralized platform on Solana enabling individuals to derive value from biological data through AI-driven analysis and complete data sovereignty. First ecosystem where data providers maintain control while contributing to scientific advancement with fair value distribution.
A cross-platform (mobile and desktop) digital catalog app for natural history collections
A python simulation in jupyter of a simple biological model