#Protein
Showing 23 of 23 repositories tagged #protein, ranked by stars
Official git repository for Biopython (originally converted from CVS)
Protein Graph Library
A Python Package for Protein Dynamics Analysis
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
A collection of research papers for AI-based protein design
Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics
PyChem-Pro: a molecular viewer, cheminformatics library, molecular descriptor calculator, molecular editor, chemical drawing editor, and many more...
LLM for Drug Editing, ICLR 2024
VSCode Extension for interactively visualising protein structure data in the editor
View proteins and trajectories in the terminal
A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)
🧬 An R package for visualizing molecular data in 3D
Self-supervised models for encoding protein localization patterns from microscopy images
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
[ICML 2025] 🧬 ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone Generation
Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Picotti lab data analysis package.
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding
Code for InstructBioMol, implementing the Nature Machine Intelligence paper "Advancing Biomolecular Understanding and Design Following Human Instructions".
DrugPipe: Generative artificial intelligence-assisted virtual screening pipeline for generalizable and efficient drug repurposing
GPT-based protein language model for PTM site prediction