#Dna

Showing 14 of 14 repositories tagged #dna, ranked by stars

biopython
biopython
biopython

Official git repository for Biopython (originally converted from CVS)

Score
100
โ˜… 5.1k โ‘‚ 1.9k +14/day
Python
google
google
deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Score
100
โ˜… 3.7k โ‘‚ 792 +5/day
Python
instadeepai
instadeepai
nucleotide-transformer

Foundation Models for Genomics & Transcriptomics

Score
50
โ˜… 892 โ‘‚ 95 +2/day
Jupyter Notebook
dib-lab
dib-lab
khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

Score
0
โ˜… 789 โ‘‚ 298 +1/day
Python
bebop
bebop
poly

A Go package for engineering organisms.

Score
0
โ˜… 731 โ‘‚ 74 +2/day
Go
lightdock
lightdock
lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Score
0
โ˜… 402 โ‘‚ 55 +1/day
Python
SupportIntelligence
SupportIntelligence
Icewater

16,432 Free Yara rules created by

Score
100
โ˜… 391 โ‘‚ 58 โ€”
YARA
pydna-group
pydna-group
pydna

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Score
100
โ˜… 228 โ‘‚ 49 +1/day
Python
josiahseaman
josiahseaman
FluentDNA

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Score
50
โ˜… 69 โ‘‚ 6 โ€”
JavaScript
DanielBiegler
DanielBiegler
visualize-dna-sequences

Visualizing DNA Sequences via Javascript

Score
25
โ˜… 52 โ‘‚ 4 โ€”
JavaScript
ranwez-search
ranwez-search
SeqTUI

A fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine sequences aligned or not โ€” all from the terminal.

Score
0
โ˜… 43 โ‘‚ 1 โ€”
Rust
IQTLabs
IQTLabs
squiggle

๐Ÿ“ˆ DNA Sequence Visualization for Humans

Score
0
โ˜… 42 โ‘‚ 9 โ€”
Python
MAGICS-LAB
MAGICS-LAB
GenoArmory

GenoArmory: A Unified Evaluation Framework for Adversarial Attacks on Genomic Foundation Models

Score
75
โ˜… 38 โ‘‚ 4 โ€”
Python
karma9874
karma9874
DNA-Cipher-Script-CTF

A simple script to decode the genome DNA binary sequence (CTF Challenge)

Score
0
โ˜… 24 โ‘‚ 5 โ€”
Python
Related Topics
#bioinformatics#visualization#genomics#protein#python#alignment#fasta#biopython#protein-structure#deep-learning#sequencing#biology

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