#Sequencing
Showing 9 of 9 repositories tagged #sequencing, ranked by stars
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Structural variant toolkit for VCFs
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
Wally: Visualization of aligned sequencing reads and contigs
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
HMMRATAC peak caller for ATAC-seq data
Compacted and colored de Bruijn graph construction and querying
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.