#Gene-expression
Showing 11 of 11 repositories tagged #gene-expression, ranked by stars
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
One-step to Cluster and Visualize Gene Expression Matrix
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
Python3 binding to mRMR Feature Selection algorithm (currently not maintained)
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.
This project aims to predict people who will survive breast cancer using machine learning models with the help of clinical data and gene expression profiles of the patients.
Deep learning methods for feature selection in gene expression autism data.