#Spatial-transcriptomics
Showing 12 of 12 repositories tagged #spatial-transcriptomics, ranked by stars
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.
A general, evolvable, and distributed agent framework & harness for data science.
DANCE: a deep learning library and benchmark platform for single-cell analysis
Python package to perform enrichment analysis from omics data.
A Toolbox for Spatial Transcriptomics Analysis
ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
Spatial-Linked Alignment Tool
DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.
MCP server for spatial transcriptomics analysis through natural language interfaces.
CONCERT predicts niche-aware perturbation responses in spatial transcriptomics
A toolset for analysis and visualisation of Spatial Transcriptomics datasets.