#Scanpy
Showing 8 of 8 repositories tagged #scanpy, ranked by stars
Single-cell analysis in Python. Scales to >100M cells.
Annotated data.
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Convert between AnnData and SingleCellExperiment
Bring your single-cell data to life
MCP server for spatial transcriptomics analysis through natural language interfaces.