#Transcriptomics
Showing 17 of 17 repositories tagged #transcriptomics, ranked by stars
Single-cell analysis in Python. Scales to >100M cells.
🧬 gget enables efficient querying of genomic reference databases
Foundation Models for Genomics & Transcriptomics
An interactive explorer for single-cell transcriptomics data
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Annotated data.
Python package to perform enrichment analysis from omics data.
A list of web-based interactive biological data visualizations.
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
PANDORA :computer:
Bring your single-cell data to life
A curated collection of AI agent skills for biomedical research, covering genomics, proteomics, single-cell analysis, clinical AI, and protein design.
Transcriptomics Visualization R package.
Multi-sample Unified Discriminant ANalysis
This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)