#Comparative-genomics

Showing 14 of 14 repositories tagged #comparative-genomics, ranked by stars

moshi4
moshi4
pyCirclize

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Score
100
★ 1.1k ⑂ 63 +6/day
Python
tanghaibao
tanghaibao
jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

Score
100
★ 921 ⑂ 201 +2/day
Python
merenlab
merenlab
anvio

An analysis and visualization platform for 'omics data

Score
89
★ 530 ⑂ 170 +4/day
Python
moshi4
moshi4
pyGenomeViz

A genome visualization python package for comparative genomics

Score
78
★ 412 ⑂ 25
Python
nextgenusfs
nextgenusfs
funannotate

Eukaryotic Genome Annotation Pipeline

Score
67
★ 391 ⑂ 93 +2/day
Python
eweitz
eweitz
ideogram

Chromosome visualization for the web

Score
44
★ 319 ⑂ 76 +1/day
JavaScript
DessimozLab
DessimozLab
FastOMA

FastOMA is a scalable software package to infer orthology relationship.

Score
33
★ 99 ⑂ 17
Python
moshi4
moshi4
ANIclustermap

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Score
0
★ 95 ⑂ 12
Python
moshi4
moshi4
COGclassifier

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Score
11
★ 85 ⑂ 6
Python
Kalan-Lab
Kalan-Lab
zol

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

Score
67
★ 72 ⑂ 5
Python
happykhan
happykhan
BRIG

BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.

Score
56
★ 51 ⑂ 8
Java
moshi4
moshi4
MGCplotter

Microbial Genome Circular plotting tool for comparative genomics using Circos

Score
0
★ 39 ⑂ 8
Python
alipirani88
alipirani88
Comparative_Genomics

Micro 612 genomics workshop

Score
22
★ 38 ⑂ 33
Shell
EBI-Metagenomics
EBI-Metagenomics
notebooks

MGnify documentation and Jupyter Lab notebooks to support downstream analysis of MGnify data (EMBL-EBI's metagenomics platform)

Score
33
★ 15 ⑂ 10
Jupyter Notebook
Related Topics
#bioinformatics#genomics#visualization#python#microbial-genomics#genomics-visualization#metagenomics#circos#matplotlib#blast#synteny#phylogenomics

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