SCpubr

SCpubr provides a streamlined way of generating publication ready plots for known Single-Cell visualizations in a "publication ready" format (SCpubr). This is, the aim is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

Installation

SCpubr can be installed via:

# From CRAN - Official release:
install.packages("SCpubr")
From GitHub - Latest stable development version:
if(!requireNamespace("devtools", quietly = TRUE)){
  install.packages("devtools") # If not installed.
}
devtools::install_github("enblacar/SCpubr", ref = "v2.0.0-dev-stable")

By default, SCpubr downloads without installing any of the required dependencies. A comprehensive report of which dependencies are still missing and which functions can be run is available through:

SCpubr::package_report(extended = TRUE)

For tutorials, check SCpubr's reference manual.

Project Status

SCpubr is now in maintenance mode. No new features are planned, but bug fixes and compatibility updates will continue to be provided.

Contributions from the community are very welcome! Whether it's a bug fix, documentation improvement, or a new idea — feel free to open an issue or submit a pull request. Check the contributing guide for more details.

Keep track of past updates in the NEWS page.

Citation

Blanco-Carmona, E. Generating publication ready visualizations 
for Single Cell transcriptomics using SCpubr. bioRxiv (2022) 
doi:10.1101/2022.02.28.482303.

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