#Somatic-variants

ShixiangWang

sigminer

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

HKU-BAL

ClairS

ClairS - a deep-learning method for long-read somatic small variant calling

HKU-BAL

ClairS-TO

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

SigProfilerSuite

SigProfilerPlotting

SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.