#Neuroimaging

Showing 33 of 33 repositories tagged #neuroimaging, ranked by stars

mne-tools
mne-tools
mne-python

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

Score
100
β˜… 3.5k β‘‚ 1.6k β€”
Python
nitrain
nitrain
nitrain

Train AI models efficiently on medical images using any framework

Score
56
β˜… 1.9k β‘‚ 299 β€”
Python
DLTK
DLTK
DLTK

Deep Learning Toolkit for Medical Image Analysis

Score
85
β˜… 1.5k β‘‚ 402 β€”
Python
nilearn
nilearn
nilearn

Machine learning for NeuroImaging in Python

Score
100
β˜… 1.4k β‘‚ 669 β€”
Python
braindecode
braindecode
braindecode

Deep learning software to decode EEG, ECG or MEG signals

Score
89
β˜… 1.3k β‘‚ 269 +4/day
Python
ANTsX
ANTsX
ANTsPy

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

Score
20
β˜… 878 β‘‚ 179 +2/day
Python
Slicer
Slicer
SlicerGitSVNArchive

:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

Score
0
β˜… 874 β‘‚ 455 β€”
C++
dipy
dipy
dipy

DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning,Β statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy includingΒ diffusion, perfusion and structural imaging.

Score
60
β˜… 831 β‘‚ 503 +2/day
Python
nipy
nipy
nipype

Workflows and interfaces for neuroimaging packages

Score
80
β˜… 830 β‘‚ 545 β€”
Python
nipy
nipy
nibabel

Python package to access a cacophony of neuro-imaging file formats

Score
40
β˜… 779 β‘‚ 286 +2/day
Python
mikeroyal
mikeroyal
Neuromorphic-Computing-Guide

Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.

Score
44
β˜… 584 β‘‚ 80 β€”
Python
neuroneural
neuroneural
brainchop

Brainchop: In-browser 3D MRI rendering and segmentation

Score
78
β˜… 532 β‘‚ 64 β€”
JavaScript
aramis-lab
aramis-lab
clinicadl

Open-source Python library for reproducible deep learning in neuroimaging

Score
67
β˜… 183 β‘‚ 60 β€”
Python
MICA-MNI
MICA-MNI
ENIGMA

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🀠

Score
77
β˜… 182 β‘‚ 46 +1/day
Jupyter Notebook
mne-tools
mne-tools
mne-cpp

MNE-CPP: The C++ framework for real-time functional brain imaging.

Score
100
β˜… 173 β‘‚ 142 +1/day
C++
teanijarv
teanijarv
yabplot

yet another brain plot - beautiful brain visualisations for the cortex, subcortex, and tracts.

Score
69
β˜… 130 β‘‚ 19 +1/day
Python
deontaepharr
deontaepharr
Diagnosing-ADHD-With-ConvLSTM

Classifying ADHD fMRI data with a CNN+LSTM Model

Score
11
β˜… 86 β‘‚ 20 β€”
Jupyter Notebook
MICA-MNI
MICA-MNI
micaopen

Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute

Score
22
β˜… 84 β‘‚ 45 β€”
Jupyter Notebook
dfsp-spirit
dfsp-spirit
fsbrain

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

Score
62
β˜… 76 β‘‚ 15 β€”
R
braph-software
braph-software
BRAPH-2

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

Score
54
β˜… 68 β‘‚ 14 +1/day
MATLAB
NeuroMorph-EPFL
NeuroMorph-EPFL
NeuroMorph

The NeuroMorph analysis and visualization toolkit

Score
31
β˜… 67 β‘‚ 24 β€”
Python
braindynamicslab
braindynamicslab
dyneusr

Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)

Score
46
β˜… 55 β‘‚ 17 β€”
Python
AICONSlab
AICONSlab
MIRACL

Multi-modal Image Registration And Connectivity anaLysis

Score
33
β˜… 49 β‘‚ 12 β€”
Python
feilong
feilong
brainplotlib

A lightweight package to plot brain surfaces with Python.

Score
15
β˜… 46 β‘‚ 4 β€”
Python
anibalsolon
anibalsolon
vscode-neuro-viewer

Check metadata and visualize neuroimages within VSCode.

Score
0
β˜… 44 β‘‚ 6 β€”
TypeScript
school-brainhack
school-brainhack
school-brainhack.github.io

Website of the BrainHack School

Score
92
β˜… 42 β‘‚ 181 β€”
Jupyter Notebook
Novestars
Novestars
Neural_Pre_Processing

Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, skull-stripped brain in a standard coordinate space

Score
0
β˜… 31 β‘‚ 7 β€”
Python
raamana
raamana
pyradigm

Research data management in biomedical and machine learning applications

Score
23
β˜… 30 β‘‚ 12 β€”
Python
aluo-x
aluo-x
BrainDiVE

Brain Diffusion for Visual Exploration: Cortical Discovery using Large Scale Generative Models (NeurIPS 2023 Oral)

Score
0
β˜… 27 β‘‚ 3 β€”
Python
Elata-Biosciences
Elata-Biosciences
elata-eeg

Open Source EEG

Score
0
β˜… 21 β‘‚ 3 β€”
Rust
confusius-tools
confusius-tools
confusius

Python package for analysis and visualization of functional ultrasound imaging data.

Score
38
β˜… 19 β‘‚ 4 +1/day
Python
fphammerle
fphammerle
freesurfer-stats

Python Library to Read FreeSurfer's Cortical Parcellation Anatomical Statistics

Score
8
β˜… 15 β‘‚ 1 β€”
Python
spm
spm
spm-notebooks

SPM Notebooks

Score
0
β˜… 12 β‘‚ 2 β€”
Jupyter Notebook
Related Topics
#neuroscience#python#deep-learning#medical-imaging#machine-learning#visualization#brain-imaging#brain#eeg#pytorch#data-science#fmri

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