#Microbiome
Showing 10 of 10 repositories tagged #microbiome, ranked by stars
Make Picrust2 Output Analysis and Visualization Easier
PANDORA :computer:
Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (MOFA, JIVE, SNF) with practical tips + code.
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
Visualize microbiome data with black magic ggtree
A fast and scalable phylogenetic tree viewer for microbiome data analysis
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
The Microbial Co-occurrence Network Explorer
A decentralized platform on Solana enabling individuals to derive value from biological data through AI-driven analysis and complete data sovereignty. First ecosystem where data providers maintain control while contributing to scientific advancement with fair value distribution.