#Atac-seq
Showing 9 of 9 repositories tagged #atac-seq, ranked by stars
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MACS -- Model-based Analysis of ChIP-Seq
:dart: ChIP peak Annotation, Comparison and Visualization
HMMRATAC peak caller for ATAC-seq data
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
A toolkit for QC and visualization of ATAC-seq results.
A Snakemake workflow and MrBiomics module for performing and visualizing differential analyses of NGS data powered by the R package limma.
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
A Snakemake workflow and MrBiomics module to split, filter, normalize, integrate and select highly variable features of count matrices resulting from next-generation sequencing (NGS) experiments (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including confounding factor analysis and diagnostic visualizations.