R2DT

🚀 Read the R2DT documentation | 📄 Latest paper.

R2DT automatically generates RNA secondary structure diagrams in consistent, reproducible and recongnisable layouts using a library of templates representing a wide range of RNAs.

Examples

The following example visualisations show LSU, SSU, and 5S rRNA, four tRNAs, two RNAse P, snoRNA, MoCo riboswitch, and U4 snRNA:

Getting started

R2DT can be used in multiple ways:

• Web application at r2dt.bio or in RNAcentral
• API powered by EMBL-EBI Web Services
• As a command line tool with Docker, Singularity, or in a bare metal installation

📄 Citation

If you use R2DT in your work, please cite one of the following papers:

R2DT: a comprehensive platform for visualizing RNA secondary structure

Nucleic Acids Research

R2DT is a framework for predicting and visualising RNA secondary structure using templates

Nature Communications