NOTE: this repository is archived and will be deprecated once phy 2.0 is released

phy-contrib

Plugins for phy. Currently, this package provides two integrated spike sorting GUIs:

• KwikGUI: to be used with Klusta and the Kwik format (successor of KlustaViewa)
• TemplateGUI: to be used with KiloSort and SpykingCircus

Quick install

You first need to install phy. Then, activate your conda environment and do:

pip install phycontrib

Installing the development version

If you want to use the bleeding-edge version, do:

git clone https://github.com/kwikteam/phy-contrib.git
cd phy-contrib
python setup.py develop

Then, you can update at any time with:

cd phy-contrib
git pull

Documentation

• Main documentation
• KwikGUI documentation (work in progress)
• TemplateGUI documentation