A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).
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Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming. It supports running workflows written in either Common Workflow Language (CWL_) 1.0-1.2 or Workflow Description Language (WDL_) 1.0-1.1, as well as having its own rich Python API for writing workflows against. It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.
- Check the
website_ for a description of Toil and its features. - Full documentation for the latest stable release can be found at
Read the Docs_.
- Please subscribe to low-volume
announce_ mailing list so we keep you informed - Google Groups discussion
forum_ - See our occasional
blog_ for tutorials. - Use
biostars_ channel for discussion.
Notes:
- Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
- Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).
